This code defines a Python function, `dna2aa`, which converts a...
August 29, 2025 at 06:54 AM
This code defines a Python function, dna2aa
, which converts a DNA sequence (dna_str
) into its corresponding amino acid sequence (aa_str
). Here's a breakdown of what the code does:
-
Parameters and Initialization:
- The function takes a single string parameter,
dna_str
, which should represent a DNA sequence. - It initializes an empty string
aa_str
to store the resulting amino acid sequence.
- The function takes a single string parameter,
-
Iterating Over DNA Sequence in Codons:
- Using
range(0, len(dna_str), 3)
, the function iterates over the DNA sequence in steps of 3 characters at a time. Each group of 3 nucleotides is called a "codon".
- Using
-
Extracting Codons:
- For each iteration, it extracts a substring of length 3,
codon = dna_str[i:i+3]
.
- For each iteration, it extracts a substring of length 3,
-
Codon to Amino Acid Mapping:
- The function uses a dictionary named
codon2aa
to map each codon to a specific amino acid. This dictionary is expected to exist outside the function but is not defined in the provided code snippet. - If the
codon
exists in the dictionarycodon2aa
, it retrieves the corresponding amino acid (aa
). - If the
codon
does not exist incodon2aa
, it defaults to the value"X"
(likely representing an unknown codon).
- The function uses a dictionary named
-
Appending the Amino Acid:
- The translated amino acid is appended to
aa_str
.
- The translated amino acid is appended to
-
Returning the Amino Acid Sequence:
- Once all the codons in
dna_str
have been processed, the function returns the resultingaa_str
, which is the amino acid sequence corresponding to the input DNA sequence.
- Once all the codons in
Example Usage (if codon2aa
is defined):
Assume codon2aa = {"ATG": "M", "TGG": "W", "TAA": "*", "TAG": "*", "TGA": "*"}
.
Input:
dna2aa("ATGTGGTAA")
Steps:
- Process codons:
"ATG"
,"TGG"
, and"TAA"
. - Translate to amino acids:
M
,W
, and*
.
Output:
"MW*"
If an unknown codon (e.g., "AAA" not in codon2aa
) appears, it will be translated as "X"
.
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