This R code calculates the **Variance Inflation Factor (VIF)** for...

August 25, 2025 at 03:10 AM

vifs <- sapply(colnames(X), function(var) { other <- setdiff(colnames(X), var) r2 <- summary( lm(X[, var] ~ X[, other], data = as.data.frame(X)) )$r.squared 1 / (1 - r2) })

This R code calculates the Variance Inflation Factor (VIF) for each variable in the data frame or matrix X. VIF is commonly used to detect multicollinearity among predictors in regression analysis.

Here’s a detailed step-by-step explanation of what the code does:

  1. Iterate through each variable in X:
    • colnames(X) retrieves the column names of X, assuming X is a matrix or data frame.
    • sapply() applies the function to each column name, and it creates a vector of results.
  2. Define the function applied to each variable:
    • For each variable (denoted as var), the function performs the following steps:
  3. Choose one variable to treat as the "dependent" variable:
    • setdiff(colnames(X), var) selects all columns of X except the current variable (var). This represents the independent variables (other) in the model.
  4. Perform a regression of the current variable (var) against the remaining variables:
    • lm(X[, var] ~ X[, other], data = as.data.frame(X)) fits a linear model where var is the dependent variable and other are the independent variables.
    • summary() computes the regression summary, and $r.squared extracts the R-squared value of the model.
  5. Compute the VIF for the current variable:
    • The formula for VIF is 1 / (1 - r²), where is the coefficient of determination (R-squared) from the regression.
  6. Return the VIF for all variables in X:
    • The result of sapply() is a named vector, where each entry corresponds to the VIF of a variable in X.

In summary:

The code calculates the VIF for each predictor variable in the dataset X. This is used to assess whether any predictors in X exhibit multicollinearity (strong linear correlation with other predictors). A high VIF value (commonly above 5 or 10) indicates problematic multicollinearity.

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